AT1G28480.1
0.56044000000000004924
with_OMAT_gene
<html><body><title>AT1G28480.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u122848001000i/AT1G28480.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u122848001000i/AT1G28480.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u122848001000i/AT1G28480.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321656502000i">AT3G16565.2</a></td><td>0.897222</td><td>ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525581001000i">AT5G55810.1</a></td><td>0.890429</td><td>AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321420001000i">AT3G14200.1</a></td><td>0.890225</td><td>DNAJ heat shock N-terminal domain-containing protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223339001000i">AT2G33390.1</a></td><td>0.885171</td><td>unknown protein</td><td>OMAT2P008200</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325754001000i">AT3G57540.1</a></td><td>0.879611</td><td>remorin family protein</td><td>OMAT3P114240</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521680002000i">AT5G16800.2</a></td><td>0.847298</td><td>GCN5-related N-acetyltransferase (GNAT) family protein</td><td>OMAT5P104820</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525494001000i">AT5G54940.1</a></td><td>0.847199</td><td>eukaryotic translation initiation factor SUI1, putative</td><td>OMAT5P114325</td><td>-</td><td>OMAT5P016220</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127495001000i">AT1G74950.1</a></td><td>0.843491</td><td>TIFY10B</td><td>OMAT1P119270</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125155001000i">AT1G51550.1</a></td><td>0.842846</td><td>F-box family protein</td><td>OMAT1P112500</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325093001000i">AT3G50930.1</a></td><td>0.841832</td><td>BCS1 (CYTOCHROME BC1 SYNTHESIS)</td><td>OMAT3P013520</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u124881001000i">AT1G48810.1</a></td><td>-0.722178</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421680701000i">AT4G16807.1</a></td><td>-0.71728</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523832001000i">AT5G38320.1</a></td><td>-0.711927</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224325502000i">AT2G43255.2</a></td><td>-0.705631</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223149001000i">AT2G31490.1</a></td><td>-0.691934</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221690501000i">AT2G16905.1</a></td><td>-0.683116</td><td>pseudogene, similar to putative MATE efflux membrane protein, blastp match of 50% identity and 7.3e-40 P-value to GP|28376699|gb|AAO41129.1||AC104487 putative MATE efflux membrane protein {Oryza sativa (japonica cultivar-group)}</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121694001000i">AT1G16940.1</a></td><td>-0.68058</td><td>F-box family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221471001000i">AT2G14710.1</a></td><td>-0.67771</td><td>F-box family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320519301000i">AT3G05193.1</a></td><td>-0.676718</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523472801000i">AT5G34728.1</a></td><td>-0.672575</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u122848001000i/AT1G28480.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 3.14e-10</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>3.14e-10 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0006796</td><td>phosphate metabolic process</td><td>23/200</td><td>3.46</td><td>6.20e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0006793</td><td>phosphorus metabolic process</td><td>23/200</td><td>3.46</td><td>6.31e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0023033</td><td>signaling pathway</td><td>12/200</td><td>3.55</td><td>3.99e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006464</td><td>protein modification process</td><td>24/200</td><td>2.31</td><td>4.68e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0044267</td><td>cellular protein metabolic process</td><td>37/200</td><td>1.81</td><td>1.23e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0043412</td><td>macromolecule modification</td><td>24/200</td><td>2.12</td><td>1.80e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044260</td><td>cellular macromolecule metabolic process</td><td>55/200</td><td>1.56</td><td>1.83e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009607</td><td>response to biotic stimulus</td><td>11/200</td><td>3.04</td><td>3.07e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0051707</td><td>response to other organism</td><td>10/200</td><td>2.99</td><td>5.97e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0019538</td><td>protein metabolic process</td><td>38/200</td><td>1.65</td><td>7.14e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009719</td><td>response to endogenous stimulus</td><td>13/200</td><td>2.52</td><td>7.34e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0043170</td><td>macromolecule metabolic process</td><td>56/200</td><td>1.45</td><td>1.11e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044237</td><td>cellular metabolic process</td><td>65/200</td><td>1.38</td><td>1.59e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006952</td><td>defense response</td><td>11/200</td><td>2.42</td><td>2.23e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009725</td><td>response to hormone stimulus</td><td>11/200</td><td>2.33</td><td>3.03e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0010033</td><td>response to organic substance</td><td>14/200</td><td>2.09</td><td>3.12e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006950</td><td>response to stress</td><td>22/200</td><td>1.77</td><td>3.23e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006810</td><td>transport</td><td>18/200</td><td>1.76</td><td>7.31e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0051234</td><td>establishment of localization</td><td>18/200</td><td>1.75</td><td>7.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009628</td><td>response to abiotic stimulus</td><td>14/200</td><td>1.89</td><td>7.85e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044238</td><td>primary metabolic process</td><td>64/200</td><td>1.29</td><td>8.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005634</td><td>nucleus</td><td>25/200</td><td>1.60</td><td>7.34e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>M</td><td>5</td><td>GO:0016301</td><td>kinase activity</td><td>26/200</td><td>3.23</td><td>3.98e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0016772</td><td>transferase activity, transferring phosphorus-containing groups</td><td>28/200</td><td>3.05</td><td>4.27e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>5</td><td>GO:0016773</td><td>phosphotransferase activity, alcohol group as acceptor</td><td>22/200</td><td>3.54</td><td>7.66e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016740</td><td>transferase activity</td><td>34/200</td><td>2.08</td><td>1.47e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0030554</td><td>adenyl nucleotide binding</td><td>20/200</td><td>2.21</td><td>3.09e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0001883</td><td>purine nucleoside binding</td><td>20/200</td><td>2.21</td><td>3.09e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0001882</td><td>nucleoside binding</td><td>20/200</td><td>2.21</td><td>3.20e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0032555</td><td>purine ribonucleotide binding</td><td>21/200</td><td>2.14</td><td>3.58e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0032553</td><td>ribonucleotide binding</td><td>21/200</td><td>2.14</td><td>3.58e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0017076</td><td>purine nucleotide binding</td><td>21/200</td><td>2.02</td><td>7.54e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0000166</td><td>nucleotide binding</td><td>24/200</td><td>1.82</td><td>1.62e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0022891</td><td>substrate-specific transmembrane transporter activity</td><td>10/200</td><td>2.27</td><td>5.06e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0022892</td><td>substrate-specific transporter activity</td><td>11/200</td><td>2.13</td><td>6.07e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0005515</td><td>protein binding</td><td>25/200</td><td>1.60</td><td>7.41e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G28480&keyword=protein%20binding">1.67E-15</a></td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>146/200</td><td>1.73</td><td>2.18e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0000230</td><td>inflorescence meristem</td><td>133/200</td><td>1.71</td><td>6.45e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0020030</td><td>cotyledon</td><td>128/200</td><td>1.74</td><td>1.26e-15</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009013</td><td>meristem</td><td>135/200</td><td>1.68</td><td>1.46e-15</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>138/200</td><td>1.65</td><td>2.64e-15</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009025</td><td>leaf</td><td>144/200</td><td>1.57</td><td>2.20e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>141/200</td><td>1.57</td><td>7.94e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0000013</td><td>cauline leaf</td><td>128/200</td><td>1.66</td><td>1.07e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0008037</td><td>seedling</td><td>139/200</td><td>1.57</td><td>1.13e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0020039</td><td>leaf lamina</td><td>131/200</td><td>1.59</td><td>1.19e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>146/200</td><td>1.42</td><td>9.74e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>140/200</td><td>1.45</td><td>1.51e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0020038</td><td>petiole</td><td>119/200</td><td>1.56</td><td>2.51e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>137/200</td><td>1.45</td><td>3.14e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>137/200</td><td>1.45</td><td>3.14e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>150/200</td><td>1.38</td><td>4.14e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>140/200</td><td>1.43</td><td>4.44e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>146/200</td><td>1.39</td><td>6.32e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>132/200</td><td>1.47</td><td>6.57e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>140/200</td><td>1.42</td><td>6.95e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>140/200</td><td>1.42</td><td>6.95e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>144/200</td><td>1.38</td><td>2.35e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>124/200</td><td>1.48</td><td>3.73e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>132/200</td><td>1.43</td><td>5.11e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>120/200</td><td>1.45</td><td>4.22e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009032</td><td>petal</td><td>123/200</td><td>1.40</td><td>1.66e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>121/200</td><td>1.41</td><td>2.22e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009052</td><td>pedicel</td><td>115/200</td><td>1.41</td><td>5.26e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0000084</td><td>sperm cell</td><td>48/200</td><td>1.48</td><td>1.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020097</td><td>generative cell</td><td>48/200</td><td>1.48</td><td>1.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>141/200</td><td>1.66</td><td>2.04e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>140/200</td><td>1.66</td><td>3.37e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>140/200</td><td>1.66</td><td>3.44e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>142/200</td><td>1.46</td><td>2.96e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0001054</td><td>4 leaf senescence stage</td><td>122/200</td><td>1.59</td><td>3.29e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0001050</td><td>leaf development stages</td><td>122/200</td><td>1.59</td><td>3.44e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>144/200</td><td>1.37</td><td>4.22e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>137/200</td><td>1.39</td><td>1.34e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>119/200</td><td>1.44</td><td>5.91e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>138/200</td><td>1.35</td><td>7.02e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>118/200</td><td>1.42</td><td>2.08e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>114/200</td><td>1.43</td><td>2.90e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0001185</td><td>C globular stage</td><td>116/200</td><td>1.41</td><td>4.44e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007631</td><td>embryo development stages</td><td>124/200</td><td>1.38</td><td>4.73e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>124/200</td><td>1.37</td><td>6.28e-07</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr000719</td><td>-</td><td>23/200</td><td>3.69</td><td>1.89e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr008271</td><td>-</td><td>20/200</td><td>4.10</td><td>2.45e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr011009</td><td>-</td><td>23/200</td><td>3.56</td><td>3.78e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>threonine</td><td>-</td><td>25/200</td><td>3.33</td><td>3.83e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>phosphorylation</td><td>-</td><td>22/200</td><td>3.58</td><td>6.44e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>serine</td><td>-</td><td>27/200</td><td>3.03</td><td>8.58e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr017442</td><td>-</td><td>20/200</td><td>3.80</td><td>8.81e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr017441</td><td>-</td><td>17/200</td><td>3.96</td><td>3.74e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>amino</td><td>-</td><td>24/200</td><td>2.79</td><td>1.88e-06</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G28480&keyword=amino">1.80E-15</a></td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>kinase</td><td>-</td><td>26/200</td><td>2.46</td><td>7.39e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>active</td><td>-</td><td>22/200</td><td>2.69</td><td>8.48e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr002290</td><td>-</td><td>12/200</td><td>4.07</td><td>9.58e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>dimerisation</td><td>-</td><td>10/200</td><td>4.16</td><td>3.39e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>related</td><td>-</td><td>47/200</td><td>1.67</td><td>1.12e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>tyrosine</td><td>-</td><td>11/200</td><td>3.10</td><td>2.60e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>70/200</td><td>1.44</td><td>2.69e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>signaling</td><td>-</td><td>11/200</td><td>2.95</td><td>4.00e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G28480&keyword=signaling">7.06E-16</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>mediated</td><td>-</td><td>10/200</td><td>2.83</td><td>9.28e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ligase</td><td>-</td><td>10/200</td><td>2.56</td><td>2.02e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>nucleus</td><td>-</td><td>23/200</td><td>1.78</td><td>2.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stimulus</td><td>-</td><td>10/200</td><td>2.32</td><td>4.26e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>putative</td><td>-</td><td>35/200</td><td>1.52</td><td>4.58e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>terminal</td><td>-</td><td>30/200</td><td>1.56</td><td>5.56e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transmembrane</td><td>-</td><td>14/200</td><td>1.93</td><td>6.56e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>dependent</td><td>-</td><td>22/200</td><td>1.64</td><td>8.03e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G28480&keyword=dependent">2.39E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>receptor</td><td>-</td><td>10/200</td><td>2.10</td><td>8.73e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>membrane</td><td>-</td><td>38/200</td><td>1.43</td><td>8.81e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>